How transfer all apps to new iPhone?

Just got a new phone and trying to transfer all my iTunes data. Music, videos, contacts and such all went fine just from when I plugged the phone into my computer but none of my apps synced. I had at one point or another 54 apps (according to iTunes) on my old iPod. I very recently deleted many of them so some of this I have no desire to transfer by I'd like the ones I kept to be on my phone.
If nothing else, I'd like to just get all my apps onto the phone, if possible I'd like to copy the. Exactly as hey are on the iPod (I have them sorted into a few groups) and ideally I'd love to have all my app data (in app purchases, saved games etc) trasfered
How can I do any or all of that?

Ask youtube.

If you have problems in synchronizing iPhone apps via iTunes, you may try a third-party desktop program to transfer them without iTunes. Find detailed manual on this page and hope it helps: http://iphone-to-pc-transfer.com